Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0780264.2b.2b.1a with 10 members (dystroglycan)

Eumetazoa / Bilateria / Deuterostomia / Chordata / Vertebrata / Gnathostomata / Euteleostomi /

... /

Sarcopterygii / Tetrapoda / Amniota / Sauria / Lepidosauria / Episquamata /

Toxicofera /

Completeness score: 1.00

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This HOG has 32 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0780264.2b.2b.1a	960	172	dystroglycan
2	HOG:E0780264.2b.2b.1a.1a	390	49	dystroglycan
3	HOG:E0780264.2b	240	246	dystroglycan
4	HOG:E0780264.2a.1b	100	11	dystroglycan
5	HOG:E0780264.2b.2b.1a.5b	90	9	dystroglycan
6	HOG:E0780264.2b.2b	80	221	dystroglycan
7	HOG:E0780264.2a.1a	30	3	dystroglycan
8	HOG:E0780264.2a	29	22	dystroglycan
9	HOG:E0780264.2b.2b.1a.1a.4b	20	2	dystroglycan
10	HOG:E0780264.2b.2b.1a.1a.4a	20	2	dystroglycan
11	HOG:E0780264.2b.2b.1a.4b	10	1	dystroglycan
12	HOG:E0780264.2b.2b.1a.4a	10	1	dystroglycan
13	HOG:E0780264.2b.2b.1a.3b	10	1	dystroglycan
14	HOG:E0780264.2b.2b.1a.2b	10	1	dystroglycan
15	HOG:E0780264.2b.2b.1a.2a	10	1	dystroglycan
16	HOG:E0780264.2b.2b.1a.1a.3b	10	1	dystroglycan
17	HOG:E0780264.2b.2b.1a.1a.3a	10	1	dystroglycan
18	HOG:E0780264.2b.2b.1a.1a.2b	10	1	dystroglycan
19	HOG:E0780264.2b.2b.1a.1a.2a	10	1	dystroglycan
20	HOG:E0780264.2b.2b.1a.1a.1b	10	1	dystroglycan
21	HOG:E0780264.2b.2b.1a.1a.1a	10	1	dystroglycan
22	HOG:E0780264.2a.1c	10	1	dystroglycan
23	HOG:E0780264.1b	10	1	dystroglycan
24	HOG:E0780264.1a	10	1	dystroglycan
25	HOG:E0780264.2b.2b.1c	9	37	dystroglycan

Showing 1 to 25 of 32 rows rows per page